STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65773.1Ferredoxin, 2Fe-2S. (102 aa)    
Predicted Functional Partners:
OPJ54785.1
Iron hydrogenase 1.
 
 0.980
hndD_3
NADP-reducing hydrogenase subunit HndC.
 
 
 0.954
hndA
NADP-reducing hydrogenase subunit HndA.
 
 0.947
preA_2
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
   
 0.927
hndC
NADP-reducing hydrogenase subunit HndC.
 
  
 0.925
hndD_2
NADP-reducing hydrogenase subunit HndC.
 
 
 0.877
OPJ64301.1
Ferredoxin-2.
  
 0.859
OPJ62334.1
Malonic semialdehyde reductase.
  
 0.859
OPJ61385.1
Malonic semialdehyde reductase.
  
 0.859
OPJ59809.1
Ferredoxin.
  
 0.859
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.