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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65773.1Ferredoxin, 2Fe-2S. (102 aa)    
Predicted Functional Partners:
hndD_3
NADP-reducing hydrogenase subunit HndC.
 
 
 0.964
OPJ54785.1
Iron hydrogenase 1.
 
 0.960
hndC
NADP-reducing hydrogenase subunit HndC.
 
  
 0.929
hndA
NADP-reducing hydrogenase subunit HndA.
 
 0.926
hndD_2
NADP-reducing hydrogenase subunit HndC.
 
 
 0.887
hndD_1
NADP-reducing hydrogenase subunit HndC.
 
 
 0.868
OPJ63499.1
Iron hydrogenase 1.
   
 0.867
OPJ56085.1
Iron hydrogenase 1.
 
 
 0.867
OPJ64301.1
Ferredoxin-2.
  
 0.865
OPJ62334.1
Malonic semialdehyde reductase.
  
 0.865
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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