Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
barA_1Signal transduction histidine-protein kinase BarA. (488 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
 
0.993
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.992
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.992
rpfC_1
Sensory/regulatory protein RpfC.
 
0.991
cdpA
Cyclic di-GMP phosphodiesterase CdpA.
  
 0.988
frzE
Gliding motility regulatory protein.
 0.982
cheV
Chemotaxis protein CheV.
  
 0.980
cph2_2
Phytochrome-like protein cph2.
 
 0.980
cph2_4
Phytochrome-like protein cph2.
 
 0.980
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.979
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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