STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
chbP_3N,N'-diacetylchitobiose phosphorylase. (3077 aa)    
Predicted Functional Partners:
chbP_1
N,N'-diacetylchitobiose phosphorylase.
  
  
 
0.829
pgcA
Phosphoglucomutase.
    
 0.823
chbP_2
N,N'-diacetylchitobiose phosphorylase.
    
  0.799
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
     
  0.796
glgD
Glycogen biosynthesis protein GlgD.
     
  0.796
rfbF
Glucose-1-phosphate cytidylyltransferase.
    
  0.785
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
    
 0.781
OPJ61029.1
Sucrose phosphorylase.
     
 0.778
yicI_1
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
     
 0.771
yicI_2
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
     
 0.771
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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