Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65671.1Ferredoxin. (273 aa)    
Predicted Functional Partners:
hndC
NADP-reducing hydrogenase subunit HndC.
 
 0.991
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.990
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.989
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
  
 0.989
hndD_3
NADP-reducing hydrogenase subunit HndC.
 
 0.982
urdA
Urocanate reductase precursor.
  
 0.966
mmgC
acyl-CoA dehydrogenase.
  
 0.965
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 0.947
hndA
NADP-reducing hydrogenase subunit HndA.
  
 0.943
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.927
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.