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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betIHTH-type transcriptional regulator BetI. (197 aa)    
Predicted Functional Partners:
OPJ65671.1
Ferredoxin.
       0.723
OPJ65449.1
FMN-binding domain protein.
  
     0.673
OPJ65673.1
Hypothetical protein.
 
     0.651
OPJ66048.1
NADPH-dependent FMN reductase.
 
     0.564
OPJ58702.1
Hypothetical protein.
  
     0.562
OPJ61331.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.484
OPJ58543.1
Hypothetical protein.
  
     0.445
OPJ60134.1
Hypothetical protein; TfoX C-terminal domain.
  
     0.441
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA; Belongs to the TtcA family.
  
   0.430
OPJ60146.1
Sarcosine/dimethylglycine N-methyltransferase.
  
 
   0.424
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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