STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdh_1NAD-dependent methanol dehydrogenase. (371 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.910
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.906
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.906
cat1
succinyl-CoA:coenzyme A transferase.
 
 
 0.901
puuE
4-aminobutyrate aminotransferase PuuE; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.853
gltB_1
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.813
bdhB
NADH-dependent butanol dehydrogenase B.
  
  
 0.783
adhE_4
Aldehyde-alcohol dehydrogenase.
 
 0.706
mmgC
acyl-CoA dehydrogenase.
  
 
 0.659
adhE_3
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
0.648
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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