Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
potBSpermidine/putrescine transport system permease protein PotB. (287 aa)    
Predicted Functional Partners:
ydcV
Inner membrane ABC transporter permease protein YdcV.
0.999
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.999
potD
Spermidine/putrescine-binding periplasmic protein precursor.
 
 
 0.998
cysA_1
Sulfate/thiosulfate import ATP-binding protein CysA; Belongs to the ABC transporter superfamily.
 
 0.996
cysA_2
Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.
 
  
  0.914
OPJ64766.1
Hypothetical protein.
    
  0.850
phnS
Putative 2-aminoethylphosphonate-binding periplasmic protein precursor.
 
  
  0.838
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
  
 0.757
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
  
 0.749
OPJ65685.1
N-acyl-D-glutamate deacylase.
       0.698
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.