Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ65695.1sigmaK-factor processing regulatory protein BofA. (89 aa)    
Predicted Functional Partners:
OPJ65696.1
Hypothetical protein.
  
    0.807
OPJ65474.1
PRC-barrel domain protein.
  
    0.715
OPJ60066.1
Hypothetical protein.
  
     0.702
OPJ62675.1
Stage III sporulation protein SpoIIIAF.
  
     0.656
spoIIM
Stage II sporulation protein M.
  
   
 0.650
OPJ65574.1
O-antigen ligase.
  
     0.624
OPJ59901.1
MazG-like family protein.
  
     0.592
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.585
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.575
pyrK_2
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
     0.565
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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