| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OPJ63868.1 | OPJ65698.1 | CLCHR_13870 | CLCHR_04730 | Plasmid pRiA4b ORF-3-like protein. | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.643 |
| OPJ63868.1 | cinA_2 | CLCHR_13870 | CLCHR_46320 | Plasmid pRiA4b ORF-3-like protein. | Putative competence-damage inducible protein; Belongs to the CinA family. | 0.509 |
| OPJ63868.1 | ffh | CLCHR_13870 | CLCHR_07140 | Plasmid pRiA4b ORF-3-like protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.606 |
| OPJ63868.1 | ftsY | CLCHR_13870 | CLCHR_07160 | Plasmid pRiA4b ORF-3-like protein. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.592 |
| OPJ63868.1 | secY | CLCHR_13870 | CLCHR_00470 | Plasmid pRiA4b ORF-3-like protein. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.919 |
| OPJ63868.1 | yajC | CLCHR_13870 | CLCHR_34520 | Plasmid pRiA4b ORF-3-like protein. | Preprotein translocase subunit YajC. | 0.591 |
| OPJ65698.1 | OPJ63868.1 | CLCHR_04730 | CLCHR_13870 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Plasmid pRiA4b ORF-3-like protein. | 0.643 |
| OPJ65698.1 | cinA_2 | CLCHR_04730 | CLCHR_46320 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Putative competence-damage inducible protein; Belongs to the CinA family. | 0.649 |
| OPJ65698.1 | dnaX_1 | CLCHR_04730 | CLCHR_04740 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.853 |
| OPJ65698.1 | ffh | CLCHR_04730 | CLCHR_07140 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.708 |
| OPJ65698.1 | flhB_1 | CLCHR_04730 | CLCHR_11370 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. | 0.717 |
| OPJ65698.1 | ftsY | CLCHR_04730 | CLCHR_07160 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.724 |
| OPJ65698.1 | recR | CLCHR_04730 | CLCHR_04720 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.976 |
| OPJ65698.1 | secA | CLCHR_04730 | CLCHR_13040 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.660 |
| OPJ65698.1 | secY | CLCHR_04730 | CLCHR_00470 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.642 |
| OPJ65698.1 | yajC | CLCHR_04730 | CLCHR_34520 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Preprotein translocase subunit YajC. | 0.746 |
| cinA_2 | OPJ63868.1 | CLCHR_46320 | CLCHR_13870 | Putative competence-damage inducible protein; Belongs to the CinA family. | Plasmid pRiA4b ORF-3-like protein. | 0.509 |
| cinA_2 | OPJ65698.1 | CLCHR_46320 | CLCHR_04730 | Putative competence-damage inducible protein; Belongs to the CinA family. | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.649 |
| cinA_2 | dnaX_1 | CLCHR_46320 | CLCHR_04740 | Putative competence-damage inducible protein; Belongs to the CinA family. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.477 |
| cinA_2 | ftsY | CLCHR_46320 | CLCHR_07160 | Putative competence-damage inducible protein; Belongs to the CinA family. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.447 |
