Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65709.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
OPJ64688.1
NMT1/THI5 like protein.
  
     0.633
xerD_1
Tyrosine recombinase XerD.
   
    0.625
xerD_4
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
    0.625
nifK_2
Nitrogenase molybdenum-iron protein beta chain.
  
     0.438
OPJ58249.1
MarR family protein.
  
     0.431
mcp4_4
Methyl-accepting chemotaxis protein 4.
       0.427
OPJ61499.1
Hypothetical protein.
   
    0.409
OPJ65708.1
Hypothetical protein.
       0.407
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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