Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xynB_2Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (533 aa)    
Predicted Functional Partners:
xylA_2
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.927
araA_2
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.768
OPJ66128.1
O-glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.638
OPJ66067.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
0.623
OPJ66097.1
Hypothetical protein.
 
  
 0.620
xynC
Endo-1,4-beta-xylanase C precursor.
 
 
 0.610
OPJ57694.1
Intracellular exo-alpha-(1->5)-L-arabinofuranosidase.
 
 
 0.604
araC_1
Arabinose operon regulatory protein.
    
  0.597
uxaC_2
Uronate isomerase.
    
 0.583
uxaC_3
Uronate isomerase.
    
 0.583
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.