Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cmdDChondramide synthase cmdD. (182 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.929
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
 0.929
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.912
OPJ65643.1
Phosphoenolpyruvate synthase.
 
     0.908
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.810
pyk_3
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.810
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.807
fba
Fructose-bisphosphate aldolase.
  
 
 0.585
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.582
cfiB_1
2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
 0.575
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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