Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ylbJSporulation integral membrane protein YlbJ. (393 aa)    
Predicted Functional Partners:
spmB
Spore maturation protein B.
 
  
 0.851
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.839
yqfD
Putative stage IV sporulation protein YqfD.
 
   
 0.836
spoIIID
Stage III sporulation protein D.
  
  
 0.796
spoIIIAA
Hypothetical protein; Transcription termination factor Rho.
  
   
 0.788
spoIIR
Stage II sporulation protein SpoIIR.
  
   
 0.784
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
    0.781
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
   
 0.780
spoVT
Stage V sporulation protein T.
  
   
 0.779
yabP
Spore protein YabP.
 
   
 0.778
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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