Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fucAL-fuculose phosphate aldolase. (211 aa)    
Predicted Functional Partners:
araA_2
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.921
xylB_1
Xylulose kinase.
 
 
 0.913
xylB_2
Xylulose kinase.
 
 
 0.842
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.837
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF.
 
  
 
0.833
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
    
 0.826
fba
Fructose-bisphosphate aldolase.
    
 0.820
OPJ64245.1
Xylose isomerase-like TIM barrel.
    
 0.740
egsA_2
Glycerol-1-phosphate dehydrogenase.
 
 
 0.738
egsA_3
Glycerol-1-phosphate dehydrogenase.
 
 
 0.737
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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