STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfmS_2Putative sensory transducer protein YfmS. (278 aa)    
Predicted Functional Partners:
cheA_2
Chemotaxis protein CheA.
 
 0.962
cheA_3
Chemotaxis protein CheA.
 
 0.962
cheA_1
Chemotaxis protein CheA.
 
 0.961
cheW_2
Chemotaxis protein CheW.
 
 0.957
cheW_4
Chemotaxis protein CheW.
 
 0.954
cheW_3
Chemotaxis protein CheW.
 
 0.952
cheW_1
Chemotaxis protein CheW.
 
 0.947
frzE
Gliding motility regulatory protein.
 
 0.937
cheV
Chemotaxis protein CheV.
 
 0.920
cheR
Chemotaxis protein methyltransferase.
 
 0.901
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.