STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiAN-acetylmuramoyl-L-alanine amidase AmiA precursor. (353 aa)    
Predicted Functional Partners:
lytC_3
N-acetylmuramoyl-L-alanine amidase LytC precursor.
  
  
  0.935
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
  
  
 
0.876
lytB_10
Putative endo-beta-N-acetylglucosaminidase precursor.
  
 
 0.826
gluP
Rhomboid protease GluP.
  
   0.731
OPJ65796.1
Hypothetical protein.
    
   0.701
OPJ62045.1
Hypothetical protein.
  
 0.659
toxA_3
Toxin A.
  
 
 0.565
fruA_2
Fructan beta-fructosidase precursor.
   
 
  0.494
OPJ58119.1
Putative peptidoglycan binding domain protein.
 
  
 0.473
lytG
Exo-glucosaminidase LytG precursor.
  
 
 0.466
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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