Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mshD_1Mycothiol acetyltransferase. (175 aa)    
Predicted Functional Partners:
OPJ65449.1
FMN-binding domain protein.
 
     0.780
OPJ65451.1
Hypothetical protein.
 
     0.553
ywnH
Putative phosphinothricin acetyltransferase YwnH.
 
 
 0.504
dpaL
Diaminopropionate ammonia-lyase.
 
  
 0.478
yncA
N-acyltransferase YncA.
 
 
 0.477
OPJ63926.1
N-acetylglutamate synthase.
 
  
 0.476
OPJ57565.1
Hypothetical protein.
 
 
 0.473
puuR_1
HTH-type transcriptional regulator PuuR.
  
 
 0.467
puuR_2
HTH-type transcriptional regulator PuuR.
  
 
 0.467
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
   
  0.458
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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