STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65284.1Hypothetical protein. (347 aa)    
Predicted Functional Partners:
OPJ65285.1
Hypothetical protein.
 
    0.940
cwlC_3
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
  
  0.623
OPJ59547.1
Cadherin-like beta sandwich domain protein.
 
    0.547
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.534
OPJ66195.1
Tetratricopeptide repeat protein.
  
     0.509
OPJ64558.1
Beta-monoglucosyldiacylglycerol synthase.
  
     0.496
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
  
  0.485
spoVB_3
Stage V sporulation protein B.
 
     0.477
OPJ65286.1
Peptidase family M50.
       0.458
OPJ60728.1
Methyltransferase domain protein.
  
     0.428
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.