Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65305.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
OPJ64500.1
Flagellar biosynthesis chaperone.
 
     0.715
OPJ64502.1
Flagellar assembly protein H.
  
     0.686
OPJ57406.1
Hypothetical protein.
  
    0.678
OPJ64499.1
Flagellar hook-length control protein FliK.
  
     0.614
fliE
Flagellar hook-basal body complex protein FliE.
 
   0.598
fliS
Flagellar protein FliS.
 
 
 0.595
flgB
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.531
OPJ64524.1
Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
    0.515
OPJ57408.1
Hypothetical protein; PSP1 C-terminal conserved region.
  
  
 0.515
OPJ61691.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.514
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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