Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ywqE_1Tyrosine-protein phosphatase YwqE. (254 aa)    
Predicted Functional Partners:
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.990
ywqD_1
Tyrosine-protein kinase YwqD.
  
 0.972
ywqD_3
Tyrosine-protein kinase YwqD.
 
 
 0.963
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.947
ywqD_2
Tyrosine-protein kinase YwqD.
  
 0.887
ywqD_4
Tyrosine-protein kinase YwqD.
  
 0.884
wecA_1
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
  
  
 0.597
OPJ65363.1
Hypothetical protein.
 
  
 0.537
glgA_1
Glycogen synthase.
 
  
 0.515
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.505
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.