Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
prtPPIII-type proteinase precursor; Belongs to the peptidase S8 family. (1056 aa)    
Predicted Functional Partners:
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
  
 0.685
cwlC_3
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
  
 0.677
OPJ57513.1
Bacterial SH3 domain protein.
  
   
 0.658
toxA_3
Toxin A.
 
 
 0.654
lytA_13
Autolysin.
 
  
 0.629
OPJ58156.1
Hypothetical protein; N-terminal phage replisome organiser.
  
    0.626
yqfD
Putative stage IV sporulation protein YqfD.
  
    0.621
OPJ65574.1
O-antigen ligase.
 
    0.619
OPJ63116.1
Stage II sporulation protein SpoIIP.
  
   
 0.607
OPJ64101.1
LysM domain protein.
 
   
 0.603
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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