Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
spmBSpore maturation protein B. (174 aa)    
Predicted Functional Partners:
spmA
Spore maturation protein A.
  
 0.999
ylbJ
Sporulation integral membrane protein YlbJ.
 
  
 0.851
OPJ62679.1
Stage III sporulation protein SpoAB.
  
  
 0.693
spoIIM
Stage II sporulation protein M.
  
  
 0.685
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.684
spoIIIAA
Hypothetical protein; Transcription termination factor Rho.
  
  
 0.675
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
   
 0.632
OPJ63116.1
Stage II sporulation protein SpoIIP.
  
  
 0.613
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.612
OPJ64941.1
Hypothetical protein.
       0.605
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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