Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdxFerredoxin. (63 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.931
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
 0.931
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.930
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.834
OPJ64955.1
Antiporter inner membrane protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.653
preA_2
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
    
 0.640
OPJ64954.1
Hypothetical protein.
       0.628
adhE_1
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.621
adhE_3
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.621
OPJ65858.1
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
 
  
  0.611
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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