Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ64117.1Endodeoxyribonuclease RusA. (230 aa)    
Predicted Functional Partners:
OPJ64118.1
Multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1.
 
     0.804
OPJ61690.1
Tetratricopeptide repeat protein.
  
   
 0.774
OPJ65579.1
Tetratricopeptide repeat protein.
  
     0.770
OPJ61691.1
Anaerobic benzoate catabolism transcriptional regulator.
  
   
 0.766
erpA
Iron-sulfur cluster insertion protein ErpA.
  
     0.764
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.760
OPJ62999.1
CYTH domain protein.
  
     0.758
OPJ61694.1
Hypothetical protein.
  
     0.749
OPJ64500.1
Flagellar biosynthesis chaperone.
  
     0.748
OPJ65782.1
Hypothetical protein.
  
     0.731
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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