STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ63668.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
OPJ63667.1
Bacteriophage holin.
       0.727
OPJ63669.1
Hypothetical protein.
       0.531
lytC_2
N-acetylmuramoyl-L-alanine amidase LytC precursor.
       0.529
OPJ63670.1
Hypothetical protein.
       0.502
OPJ63671.1
Hypothetical protein.
       0.484
OPJ63672.1
Hypothetical protein.
       0.451
OPJ63673.1
Hypothetical protein.
       0.446
OPJ63674.1
Hypothetical protein.
       0.415
OPJ63675.1
Hypothetical protein.
       0.415
OPJ63676.1
Phage tail protein (tail_P2_I).
       0.415
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.