Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
OPJ63679.1Phage P2 GpU. (134 aa)    
Predicted Functional Partners:
OPJ63676.1
Phage tail protein (tail_P2_I).
 
 
 0.998
OPJ63677.1
Baseplate J-like protein.
 
 
 0.998
OPJ63678.1
Protein 25-like lysozyme.
 
 
 0.997
OPJ63682.1
Phage tail protein X.
 
 
 0.997
OPJ63687.1
Hypothetical protein.
 
 
 0.995
OPJ63681.1
Phage late control protein Gpd.
 
  
 0.993
OPJ63686.1
Phage tail tube protein FII.
 
 
 0.993
OPJ63675.1
Hypothetical protein.
 
  
 0.992
OPJ63680.1
Phage-related baseplate assembly protein.
 
  
 0.992
OPJ63697.1
Phage terminase large subunit (GpA).
 
    0.945
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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