STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ63324.1ABC-2 type transporter. (319 aa)    
Predicted Functional Partners:
OPJ63325.1
ABC-2 type transporter.
 
    0.923
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
 0.892
malT_2
HTH-type transcriptional regulator MalT.
 
     0.861
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
 0.689
OPJ54732.1
Nitroreductase family protein.
 
    0.653
yxlF_3
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.636
drrA_2
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
 
 0.584
skfE
SkfA peptide export ATP-binding protein SkfE.
  
 
 0.582
ytrB_1
ABC transporter ATP-binding protein YtrB.
  
 
 0.582
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
  
 
 0.582
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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