Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yidA_2Sugar phosphatase YidA. (261 aa)    
Predicted Functional Partners:
OPJ62369.1
Putative phosphatase.
 
 
  0.866
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.795
OPJ56649.1
Putative phosphatase.
  
     0.773
ywpJ_2
Putative phosphatase YwpJ.
  
     0.767
ywpJ_3
Putative phosphatase YwpJ.
  
     0.765
ywpJ_1
Putative phosphatase YwpJ.
  
     0.764
ywpJ_4
Putative phosphatase YwpJ.
  
   
 0.764
sacX
Negative regulator of SacY activity.
    
 0.605
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
    
 0.605
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
    
 0.605
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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