Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ62675.1Stage III sporulation protein SpoIIIAF. (201 aa)    
Predicted Functional Partners:
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.995
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.993
spoIIIAG
Hypothetical protein.
 
  
 0.988
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.983
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.972
OPJ62679.1
Stage III sporulation protein SpoAB.
 
  
 0.955
spoIIIAA
Hypothetical protein; Transcription termination factor Rho.
 
  
 0.885
OPJ64101.1
LysM domain protein.
  
    0.747
OPJ63116.1
Stage II sporulation protein SpoIIP.
  
  
 0.741
OPJ65574.1
O-antigen ligase.
  
     0.734
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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