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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIAAHypothetical protein; Transcription termination factor Rho. (306 aa)    
Predicted Functional Partners:
OPJ62679.1
Stage III sporulation protein SpoAB.
 
  
 0.998
spoIIIAG
Hypothetical protein.
 
  
 0.985
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.971
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.968
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.968
spoIIIAH
Stage III sporulation protein AH.
  
  
 0.927
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.896
OPJ62675.1
Stage III sporulation protein SpoIIIAF.
 
  
 0.892
spoIIID
Stage III sporulation protein D.
  
   
 0.884
spoIIR
Stage II sporulation protein SpoIIR.
  
  
 0.864
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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