STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycG_5Sensor histidine kinase YycG. (463 aa)    
Predicted Functional Partners:
yycF
Transcriptional regulatory protein YycF.
 0.982
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.922
regX3_3
Sensory transduction protein regX3.
 0.913
frzE
Gliding motility regulatory protein.
   
 0.864
phoR_9
Alkaline phosphatase synthesis sensor protein PhoR.
  
 
 
0.860
hssR_2
Heme response regulator HssR.
 0.853
regX3_2
Sensory transduction protein regX3.
 0.839
rpfC_1
Sensory/regulatory protein RpfC.
 
 
0.826
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.824
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.822
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.