Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ62368.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
OPJ62367.1
Putative two-component membrane permease complex subunit.
 
  
 0.950
OPJ62485.1
Putative two-component membrane permease complex subunit.
 
  
 0.873
OPJ62366.1
CobW/HypB/UreG, nucleotide-binding domain.
 
     0.758
yjiA
Putative GTP-binding protein YjiA.
 
     0.602
OPJ54673.1
Signal peptidase (SPase) II.
  
     0.549
OPJ65574.1
O-antigen ligase.
  
     0.542
OPJ65857.1
Hypothetical protein.
  
     0.522
OPJ59547.1
Cadherin-like beta sandwich domain protein.
 
     0.510
OPJ62194.1
Hypothetical protein.
  
     0.501
OPJ55700.1
Tetratricopeptide repeat protein.
  
     0.500
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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