Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ62195.1Flavodoxin. (138 aa)    
Predicted Functional Partners:
OPJ62194.1
Hypothetical protein.
 
     0.932
fprA1_3
Flavo-diiron protein FprA1.
  
  
 0.463
fprA1_4
Flavo-diiron protein FprA1.
  
  
 0.463
yijE
Putative inner membrane transporter yiJE.
       0.459
dfx_1
Desulfoferrodoxin.
  
  
 0.444
dfx_2
Desulfoferrodoxin.
  
  
 0.444
cysH
Phosphoadenosine phosphosulfate reductase.
     
  0.424
OPJ56657.1
Hypothetical protein.
 
 
  0.419
OPJ56656.1
Hypothetical protein.
 
 
  0.417
OPJ63905.1
Bacteriohemerythrin.
  
  
 0.416
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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