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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araP_2L-arabinose transport system permease protein AraP. (299 aa)    
Predicted Functional Partners:
araQ_8
L-arabinose transport system permease protein AraQ.
 0.989
malG_2
Maltose transport system permease protein MalG.
 0.976
malG_1
Maltose transport system permease protein MalG.
 0.975
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.975
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.975
msmE_5
Multiple sugar-binding protein precursor.
 
 0.953
araQ_3
L-arabinose transport system permease protein AraQ.
 0.944
araQ_4
L-arabinose transport system permease protein AraQ.
 
 0.938
araQ_12
L-arabinose transport system permease protein AraQ.
 0.938
araQ_13
L-arabinose transport system permease protein AraQ.
 
 0.938
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.