STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ62223.1Hypothetical protein; L-fucose isomerase, C-terminal domain. (490 aa)    
Predicted Functional Partners:
OPJ62224.1
Hypothetical protein.
 
   
 0.906
xylB_1
Xylulose kinase.
 
 
 0.854
xylB_2
Xylulose kinase.
 
 
 0.849
yvgN
Glyoxal reductase.
     
  0.608
ywqF
UDP-glucose 6-dehydrogenase YwqF.
     
  0.608
nagC_3
N-acetylglucosamine repressor.
    
 0.561
moeA
Molybdopterin molybdenumtransferase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
   
    0.550
nagC_2
N-acetylglucosamine repressor.
    
 0.547
rbsK_2
Ribokinase.
 
  
  0.530
rbsK_1
Ribokinase.
 
  
  0.527
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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