STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ62032.1Peptidase family M50. (289 aa)    
Predicted Functional Partners:
spoIIM
Stage II sporulation protein M.
 
  
 0.622
spoIIIAH
Stage III sporulation protein AH.
  
  
 0.609
OPJ58581.1
Hypothetical protein.
  
     0.608
spoIIID
Stage III sporulation protein D.
   
  
 0.579
mreD
Rod shape-determining protein MreD.
 
     0.572
OPJ62679.1
Stage III sporulation protein SpoAB.
  
  
 0.571
spoIVB
SpoIVB peptidase precursor.
  
   
 0.558
OPJ62675.1
Stage III sporulation protein SpoIIIAF.
  
    0.558
OPJ62033.1
Hypothetical protein.
       0.553
OPJ57327.1
Putative phosphoribosyl transferasec.
 
  
 0.538
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.