Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yhaOPutative metallophosphoesterase YhaO. (377 aa)    
Predicted Functional Partners:
polA_2
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
 0.981
recF_1
DNA replication and repair protein RecF.
 
 
 0.975
sbcC
Nuclease SbcCD subunit C.
  
 0.938
OPJ59690.1
Hypothetical protein.
  
 0.938
OPJ56115.1
Chromosome segregation protein.
  
 0.938
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.826
polA_1
DNA polymerase I.
   
 0.808
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN precursor.
    
  0.804
recQ_1
ATP-dependent DNA helicase RecQ.
  
 0.798
recQ_2
ATP-dependent DNA helicase RecQ.
  
 0.798
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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