STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flr_3Flavoredoxin. (188 aa)    
Predicted Functional Partners:
flr_6
Flavoredoxin.
  
     0.774
flr_9
Flavoredoxin.
  
     0.772
preA_1
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
  0.642
preA_2
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
  0.557
ssuC_8
Putative aliphatic sulfonates transport permease protein SsuC.
  
 
  0.518
abfD
4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-delta-isomerase.
  
 
 0.509
mmgC
acyl-CoA dehydrogenase.
  
 
 0.502
urdA
Urocanate reductase precursor.
    
 0.473
trmFO
methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.
    
 0.454
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
  0.426
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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