Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhaS_5HTH-type transcriptional activator RhaS. (322 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.794
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.766
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.766
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
     
 0.766
araC_1
Arabinose operon regulatory protein.
 
   0.702
adaA_4
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
 
   0.681
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.627
rhaS_3
HTH-type transcriptional activator RhaS.
 
 
 0.622
tetD_1
Transposon Tn10 TetD protein.
 
   0.613
btr_4
HTH-type transcriptional activator Btr.
  
     0.612
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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