Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yckBPutative ABC transporter extracellular-binding protein YckB precursor. (295 aa)    
Predicted Functional Partners:
artP_3
Arginine-binding extracellular protein ArtP precursor.
 
  
 
0.954
tcyB
L-cystine transport system permease protein TcyB.
 
 0.941
artQ_1
Arginine transport system permease protein ArtQ.
 
 0.939
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
 
 0.930
glnP_1
Putative glutamine ABC transporter permease protein GlnP.
 
 0.927
glnP_3
Glutamine transport system permease protein GlnP.
 
 0.915
glnP_4
Putative glutamine ABC transporter permease protein GlnP.
 
 0.914
glnM
Putative glutamine ABC transporter permease protein GlnM.
 
 0.913
glnP_2
Glutamine transport system permease protein GlnP.
 
 0.911
glnQ_5
Glutamine transport ATP-binding protein GlnQ.
 
 0.906
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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