Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sbmCDNA gyrase inhibitor. (151 aa)    
Predicted Functional Partners:
OPJ61148.1
Pyridoxamine 5'-phosphate oxidase.
 
     0.706
miaB_1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
   
    0.550
OPJ59247.1
Hypothetical protein.
  
     0.550
OPJ60813.1
Hypothetical protein.
  
     0.503
OPJ62786.1
Mor transcription activator family protein.
  
     0.480
OPJ62831.1
Hypothetical protein.
  
     0.467
OPJ59320.1
Mor transcription activator family protein.
  
     0.461
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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