STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ61148.1Pyridoxamine 5'-phosphate oxidase. (156 aa)    
Predicted Functional Partners:
sbmC
DNA gyrase inhibitor.
 
     0.706
OPJ61149.1
Phosphotransferase enzyme family protein.
 
     0.677
OPJ60138.1
Glyoxalase-like domain protein.
  
     0.665
OPJ58646.1
Acetyltransferase (GNAT) family protein.
  
     0.599
ydeA_2
Putative protease YdeA.
  
     0.560
OPJ61490.1
Hypothetical protein.
 
     0.539
OPJ60286.1
HTH domain protein.
  
     0.536
OPJ60292.1
Alpha/beta hydrolase family protein.
  
     0.522
OPJ61141.1
Hypothetical protein.
  
     0.521
OPJ60133.1
GNAT acetyltransferase.
  
     0.484
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.