STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaBAscorbate-specific phosphotransferase enzyme IIB component. (94 aa)    
Predicted Functional Partners:
ulaC
Ascorbate-specific phosphotransferase enzyme IIA component.
 
 
 0.998
ulaA
Ascorbate-specific permease IIC component UlaA.
 
 
 0.995
licR_2
Putative licABCH operon regulator.
 
 
 0.980
licR_1
Putative licABCH operon regulator.
 
 
 0.954
mtlR
Transcriptional regulator MtlR.
 
 
 0.921
gatC_1
Galactitol permease IIC component.
 
 
 0.899
fruA_4
PTS system fructose-specific EIIABC component.
 
 
 0.850
ptsH
Phosphocarrier protein HPr.
    
 0.829
fruA_3
PTS system fructose-specific EIIABC component.
 
 
 0.795
fruA_1
PTS system fructose-specific EIIABC component.
 
 
 0.794
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.