Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
melR_4Melibiose operon regulatory protein. (284 aa)    
Predicted Functional Partners:
xynB_1
Beta-xylosidase.
 
 
 
 0.907
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
 
 0.871
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.868
fruA_1
PTS system fructose-specific EIIABC component.
   
 0.846
araC_1
Arabinose operon regulatory protein.
 
0.846
fruA_3
PTS system fructose-specific EIIABC component.
   
 0.846
btr_1
HTH-type transcriptional activator Btr.
 
0.845
btr_5
HTH-type transcriptional activator Btr.
 
0.843
marA_2
Multiple antibiotic resistance protein MarA.
 
0.841
tetD_1
Transposon Tn10 TetD protein.
 
0.824
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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