Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ60702.1Periplasmic [NiFeSe] hydrogenase large subunit. (503 aa)    
Predicted Functional Partners:
hydA
Periplasmic [NiFe] hydrogenase small subunit precursor.
 
 0.995
OPJ59141.1
Periplasmic [NiFeSe] hydrogenase small subunit precursor.
 
 0.990
hybD
Hydrogenase 2 maturation protease.
 
 
 0.982
hypA
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.951
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.900
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
 0.900
hypD
Hydrogenase isoenzymes formation protein HypD.
 
 
 0.899
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.897
hybG
Hydrogenase-2 operon protein HybG.
 
 
 0.884
OPJ59139.1
Hydrogenase 2 maturation endopeptidase.
 
 
 0.883
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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