Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
blaR1_3Regulatory protein BlaR1. (542 aa)    
Predicted Functional Partners:
blaI_3
Penicillinase repressor.
 
 
 0.987
blaI_2
Penicillinase repressor.
 
 
 0.976
blaI_1
Penicillinase repressor.
 
 
 0.971
fruA_2
Fructan beta-fructosidase precursor.
  
 
 0.834
lytB_10
Putative endo-beta-N-acetylglucosaminidase precursor.
  
 
 0.823
blaR1_1
Regulatory protein BlaR1.
 
  
 
0.704
OPJ65905.1
Hypothetical protein.
    
  0.701
OPJ65284.1
Hypothetical protein.
    
  0.701
OPJ62201.1
Hypothetical protein.
    
  0.701
blaR1_2
Regulatory protein BlaR1.
 
  
 
0.701
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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