Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ60143.1FR47-like protein. (230 aa)    
Predicted Functional Partners:
mmuM
Homocysteine S-methyltransferase.
       0.783
OPJ60141.1
HDOD domain protein.
 
 
   0.582
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
      0.573
sttH
Streptothricin hydrolase.
       0.499
pheA
P-protein.
 
  
  0.498
OPJ60136.1
ribosomal-protein-S5-alanine N-acetyltransferase.
 
 
 0.482
OPJ59160.1
Hypothetical protein.
  
     0.474
puuR_1
HTH-type transcriptional regulator PuuR.
  
 
 0.467
puuR_2
HTH-type transcriptional regulator PuuR.
  
 
 0.467
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
   
  0.458
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: medium (44%) [HD]