Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching mobility protein. (343 aa)    
Predicted Functional Partners:
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
   
 0.914
epsF_2
Type II secretion system protein F.
 
  
 0.865
OPJ60064.1
Competence protein A.
 
   
 0.856
epsF_1
Type II secretion system protein F.
 
  
 0.831
pilE1
Fimbrial protein precursor.
 
  
 0.616
epsE_1
Type II secretion system protein E.
 
  
0.611
OPJ60066.1
Hypothetical protein.
  
  
 0.611
pilE
Fimbrial protein precursor.
 
  
 0.607
frzE
Gliding motility regulatory protein.
  
  
 0.517
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.493
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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