Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsE_1Type II secretion system protein E. (561 aa)    
Predicted Functional Partners:
epsF_2
Type II secretion system protein F.
 
 
 0.993
epsF_1
Type II secretion system protein F.
 
 
 0.985
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
 
 0.953
pilE1
Fimbrial protein precursor.
 
 0.951
OPJ60064.1
Competence protein A.
 
 
 0.942
pilE
Fimbrial protein precursor.
 
 0.937
OPJ64060.1
Hypothetical protein.
   
  
 0.855
OPJ60065.1
Fimbrial assembly protein PilN.
  
 
 0.839
OPJ60066.1
Hypothetical protein.
  
 
 0.803
comEA_2
ComE operon protein 1.
  
  
 0.754
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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