STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsE_1Type II secretion system protein E. (561 aa)    
Predicted Functional Partners:
epsF_2
Type II secretion system protein F.
 
 
 0.992
epsF_1
Type II secretion system protein F.
 
 
 0.982
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
 
 0.955
OPJ60064.1
Competence protein A.
 
 
 0.955
pilE1
Fimbrial protein precursor.
 
 0.940
pilE
Fimbrial protein precursor.
 
 0.925
OPJ60066.1
Hypothetical protein.
  
 
 0.846
OPJ60065.1
Fimbrial assembly protein PilN.
  
 
 0.845
OPJ64060.1
Hypothetical protein.
   
  
 0.788
OPJ64494.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.711
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.