Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsF_2Type II secretion system protein F. (400 aa)    
Predicted Functional Partners:
epsE_1
Type II secretion system protein E.
 
 
 0.993
gspE
Putative type II secretion system protein E.
 
 
 0.985
OPJ60064.1
Competence protein A.
 
 
 
 0.961
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
  
 0.954
pilE1
Fimbrial protein precursor.
 
  
 0.937
pilE
Fimbrial protein precursor.
 
  
 0.884
pilT
Twitching mobility protein.
 
  
 0.865
OPJ60065.1
Fimbrial assembly protein PilN.
   
 
 0.817
OPJ60066.1
Hypothetical protein.
   
 
 0.817
comEA_2
ComE operon protein 1.
  
  
 0.782
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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